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Under Payroll> Payroll Processing> Payroll Start and Status >Check Register.

Click Custom Templates click Create Custom Template 

Define the Template Name, select File Delimiter Other, define a Comma in the field to the right of Other (,). Click Continue.

In Field called Line Type select Detail, click the white down arrow and select the Field Names desired such as Check Date, Check Number, Employee Name, Check Amount, etc. in each corresponding column.

Then click in Line Type drop down field select Custom, the Line Field will say Custom Data.

Click on the white down arrow and select Custom Data then click Save