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Unemployment wages are calculating as negative.  I can't figure out where the system is getting that number from. 

Total Unemployment Wages are calculated as:

1. The sum of Gross amounts from Pay codes in Employee Accumulators for the reporting Quarter/Year that have not been defined on the Generate screen as Exclude.
2. Minus Employee Amounts from Deduction codes in Employee Accumulators for the reporting Quarter/Year that have been defined on the Generate screen as Exclude. 
3. Plus Employer Amounts from Deduction codes in Employee Accumulators for the reporting Quarter/Year that have been defined on the Generate screen as Include.

This calculation occurs for any employee with the Unemployment Tax option selected in the Employee Master, that also has Quarterly Accumulator values.

In most cases, there are truly no reportable earnings for the Quarter and in that scenario, you need to delete the ICESA Period Record for this employee before creating the submission file. 

Otherwise, you will need to correct the define issue that's preventing the math you're expecting, such as removing a Pay code defined as Exclude that should not actually be excluded.